Package index

Entry point

One call that runs the whole validation pipeline and writes the report.

validate_cohort()

Validate a patient cohort for real-world-evidence use

Connection

Open and close a CDM connection with table validation.

cdm_connect()

Connect to an OMOP CDM database

cdm_disconnect()

Disconnect from a CDM database

Demo data

A small synthetic OMOP CDM in DuckDB for examples and trying the package offline.

example_cdm()

Create a small in-memory OMOP CDM for examples and demos

Validation modules

The four checks, callable individually.

run_concepts()

Module 1 - Concept Coverage

run_attrition()

Module 2 - Cohort Attrition Audit

run_density()

Module 3 - Temporal Data Density

run_covariates()

Module 4 - Covariate Feasibility

Reporting

Render the HTML report, write the JSON sidecar, and build the summary.

render_validation_report()

Render the validation report (HTML) and write the JSON sidecar

write_results_json()

Write the JSON sidecar (no rendering)

build_check_summary()

Build the traffic-light validation summary table

classify_status()

Classify a vector of module flags into a traffic-light status